FastQCFastQC Report
Mon 8 Aug 2022
EGAF00004924484

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004924484
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12236730
Sequences flagged as poor quality0
Sequence length101
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGTCATCTACTCTACCATCTTTGCAGGCACACTCATCACAGCGCTAAGC476090.3890663600488039No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC383410.3133271715564534No Hit
GTGTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGA331350.270783125884121No Hit
CGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGAAAC295510.2414942554097377No Hit
GTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGAGT294830.24093855139404072No Hit
CAACCCGTCATCTACTCTACCATCTTTGCAGGCACACTCATCACAGCGCT203190.16604926316099153No Hit
TGTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGAG198430.16215933505111252No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC184440.15072654213993444No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG178240.14565982905563823No Hit
ATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAA174610.14269335026596158No Hit
GGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGAGTCGGG169830.13878707792032674No Hit
GACAAATCAAGAAACAAACTGCACTTGTTGAGCTTGTGAAACACAAGCCC167220.1366541551541956No Hit
CGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAGAAGAAAC165470.1352240345255636No Hit
GACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGAA160750.13136679488719616No Hit
CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAG159250.13014097720551163No Hit
GCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGAAACTAACCAGGATT159000.12993667425856417No Hit
CTAGCATTTACCATCTCACTTCTAGGAATACTAGTATATCGCTCACACCT150620.12308843947688639No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA150250.1227860711154042No Hit
GAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGAGTCG147860.12083293494258678No Hit
CCCGTCATCTACTCTACCATCTTTGCAGGCACACTCATCACAGCGCTAAG141380.11553740255770945No Hit
CCCAACCCGTCATCTACTCTACCATCTTTGCAGGCACACTCATCACAGCG137390.11227672752442851No Hit
GTTAGTTTTACCCTACTGATGATGTGTTGTTGCCATGGTAATCCTGCTCA130430.1065889334814121No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)