FastQCFastQC Report
Mon 8 Aug 2022
EGAF00004924493

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004924493
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences27189218
Sequences flagged as poor quality0
Sequence length151
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT2300800.8462177911847262No Hit
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG777960.2861281262300372No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC681380.2506066926970831No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC648900.2386607809021944No Hit
CTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCTC509790.18749711742353162No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG323160.11885593767352925No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA286210.10526599183544007No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)