FastQCFastQC Report
Wed 1 May 2024
EGAF00004924495

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004924495
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18576731
Total Bases2.8 Gbp
Sequences flagged as poor quality0
Sequence length151
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGA1407280.7575498617060236No Hit
GTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGAGT1255760.6759854572906288No Hit
TGTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGAG868730.46764417270186015No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA538860.29007256443558344No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC517340.2784881796479693No Hit
CGCAAAATTAACCCCCTAATAAAATTAATTAACCACTCATTCATCGACCT479260.2579894169754625No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG428480.2306541446931648No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG403570.21724489631679547No Hit
CGGTGTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCG401760.21627055912043944No Hit
GGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGAGTCGGG370350.19936230976268107No Hit
GAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGAGTCG334790.18022008285526664No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC304500.16391473828199374No Hit
TGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGAGTC302400.16278429181108345No Hit
TGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATT298450.1606579758300855No Hit
CGACCGTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACC290280.1562600007504011No Hit
CTAAATACTACCGTATGGCCCACCATAATTACCCCCATACTCCTTACACT282650.1521527119060937No Hit
GGTGTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGG275280.14818538310104185No Hit
AGTAGGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCT263960.14209173831499203No Hit
ATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGGCG255670.1376291662941128No Hit
CTAGCATTTACCATCTCACTTCTAGGAATACTAGTATATCGCTCACACCT252460.1359011981171499No Hit
CCGTCATCTACTCTACCATCTTTGCAGGCACACTCATCACAGCGCTAAGC238170.12820877903652692No Hit
TTTACATAAATATTATACTAGCATTTACCATCTCACTTCTAGGAATACTA234240.1260932292123948No Hit
CATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCCCT231960.12486588732969219No Hit
CCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGAGTCGGGTT229800.12370314238818446No Hit
CTACCGTATGGCCCACCATAATTACCCCCATACTCCTTACACTATTCCTC229630.12361163005482503No Hit
GTTAGTTTTACCCTACTGATGATGTGTTGTTGCCATGGTAATCCTGCTCA228800.12316483454489383No Hit
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT221910.11945589350462146No Hit
GACAAATCAAGAAACAAACTGCACTTGTTGAGCTTGTGAAACACAAGCCC215920.11623142952331064No Hit
GACAAATCAAGAAACAAACTGCACTTGTTGAGCTCGTGAAACACAAGCCC207690.11180115597302882No Hit
CTTTAAATGGGTAAGAAGCCCGGCTCGCTGGCGTGGAGCCGGGCGTGGAA201760.10860899046231545No Hit
AATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGG199520.10740318089334448No Hit
CAAGGATTCAGAGTGCCCCTCCGGCCTCGCCATGAGGCTCTTCCTGTCGC194890.10491081557890891No Hit
CCCCACACGCCTTTGGCACAATGAAGTGGGTAACCTTTATTTCCCTTCTT194230.1045555324023371No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)