FastQCFastQC Report
Sun 11 Sep 2022
EGAF00004924502

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004924502
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3572864
Sequences flagged as poor quality0
Sequence length101
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCAAAATTAACCCCCTAATAAAACTAATTAACCACTCATTCATCGACCT206710.5785554669867087No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC149590.41868372263819725No Hit
CTAGCATTTACCATCTCACTTCTAGGAATACTAGTATATCGCTCACACCT126550.3541976408841758No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC118060.3304351914878372No Hit
CTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCATGA109630.30684067459606634No Hit
AGTAGGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCT98970.2770046662845269No Hit
CATAAATATTATACTAGCATTTACCATCTCACTTCTAGGAATACTAGTAT94720.26510944721097696No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG88170.24677681546232938No Hit
CCGTCATCTACTCTACCATCTTTGCAGGCACACTCATCACAGCGCTAAGC87650.2453214004227421No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG86820.24299833410955468No Hit
CTACCGTATGGCCCACCATAATTACCCCCATATTCCTTACACTATTCCTC84130.2354693601547666No Hit
TTTACATAAATATTATACTAGCATTTACCATCTCACTTCTAGGAATACTA75810.21218271952136997No Hit
CTAAATACTACCGTATGGCCCACCATAATTACCCCCATATTCCTTACACT67640.18931591014939275No Hit
GTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCAT65070.1821228012037402No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA58560.1639021244581378No Hit
CAACCCGTCATCTACTCTACCATCTTTGCAGGCACACTCATCACAGCGCT57940.16216682191093756No Hit
CAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCATGATCA56000.1567370042632465No Hit
ATATTATACTAGCATTTACCATCTCACTTCTAGGAATACTAGTATATCGC55990.1567090155124852No Hit
CCAACCTCCTACTCCTCATTGTACCCATTCTAATCGCAATGGCATTCCTA55980.1566810267617239No Hit
CATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCCCT49170.13762068749328268No Hit
CGACCGTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACC49110.13745275498871495No Hit
CCAAAATGAACGAAAATCTGTTCGCTTCATTCATTGCCCCCACAATCCTA49000.1371448787303407No Hit
CCCGTCATCTACTCTACCATCTTTGCAGGCACACTCATCACAGCGCTAAG44130.12351435710959051No Hit
AAATATTATACTAGCATTTACCATCTCACTTCTAGGAATACTAGTATATC43160.120799448285745No Hit
ACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTACCCAAA42780.11973587575681582No Hit
ATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGGCG42490.1189242019847383No Hit
GTAAAACCCAGCCCATGACCCCTAACAGGGGCCCTCTCAGCCCTCCTAAT42030.11763671944971876No Hit
TGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATT41590.11640521441622183No Hit
CAAGTAGGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCAC40950.11461393436749902No Hit
CCCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTA39940.11178707054060831No Hit
GGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCA36170.10123531150360048No Hit
CCATAATTACCCCCATATTCCTTACACTATTCCTCATCACCCAACTAAAA36110.10106737899903272No Hit
CAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTACCC36100.10103939024827141No Hit
CTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCCCTCTCAG35890.10045162648228424No Hit
CTCAAACTACGAACGCACTCACAGTCGCATCATAATCCTCTCTCAAGGAC35770.10011576147314873No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)