FastQCFastQC Report
Sun 11 Sep 2022
EGAF00004924510

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004924510
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3053262
Sequences flagged as poor quality0
Sequence length101
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC113320.37114404201146184No Hit
CGCAAAATTAACCCCCTAATAAAACTAATTAACCACTCATTCATCGACCT106470.34870902005789217No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC82990.2718076601352914No Hit
CTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCATGA69460.22749439779488298No Hit
CTAGCATTTACCATCTCACTTCTAGGAATACTAGTATATCGCTCACACCT65800.21550721818173482No Hit
CATAAATATTATACTAGCATTTACCATCTCACTTCTAGGAATACTAGTAT49700.1627767286266295No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG48050.15737267224365284No Hit
AGTAGGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCT46540.15242714185680759No Hit
CTACCGTATGGCCCACCATAATTACCCCCATATTCCTTACACTATTCCTC46490.15226338257247493No Hit
GTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCAT43960.1439771627852441No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG41400.1355926874274137No Hit
CAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCATGATCA39230.12848553448737776No Hit
ATATTATACTAGCATTTACCATCTCACTTCTAGGAATACTAGTATATCGC34390.11263363576397964No Hit
CCGTCATCTACTCTACCATCTTTGCAGGCACACTCATCACAGCGCTAAGC34080.11161832820111738No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)