FastQCFastQC Report
Wed 1 May 2024
EGAF00004924525

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004924525
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21992556
Total Bases3.3 Gbp
Sequences flagged as poor quality0
Sequence length151
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCCTCTTGAACTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTA489510.22257985838480984No Hit
GGCTGAGATGCTTTTAAATGTGATGTTATAAGCCTAAGGCAGCTTGACTT253630.11532538555318445No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)