FastQCFastQC Report
Fri 9 Sep 2022
EGAF00004924534

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004924534
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19405673
Sequences flagged as poor quality0
Sequence length6
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGATC1907152398.27808084780156No Hit
NAGATC948810.4889343440961826No Hit
CAGATA343120.17681427487724855No Hit
CAGCTC341420.17593824238922298No Hit
CAGTTC301910.155578216741053No Hit
CAGATT294350.1516824487354806No Hit
TAGATC206320.10631942525260525No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)