FastQCFastQC Report
Mon 8 Aug 2022
EGAF00004924547

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004924547
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6489007
Sequences flagged as poor quality0
Sequence length101
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC272320.41966359413697657No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC214050.3298655711112655No Hit
CGCAAAATTAACCCCCTAATAAAACTAATTAACCACTCATTCATCGACCT180610.2783322625480293No Hit
CTAGCATTTACCATCTCACTTCTAGGAATACTAGTATATCGCTCACACCT139000.2142084297335478No Hit
CTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCATGA123950.1910153587444119No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG108620.16739078876012925No Hit
CATAAATATTATACTAGCATTTACCATCTCACTTCTAGGAATACTAGTAT104860.16159637368244478No Hit
CTACCGTATGGCCCACCATAATTACCCCCATATTCCTTACACTATTCCTC102440.1578669895101053No Hit
AGTAGGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCT95100.14655555156590214No Hit
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT90560.13955910357316612No Hit
ACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTACCCAAA90510.13948205018117563No Hit
GTTAGTTTTACCCTACTGATGATGTGTTGTTGCCATGGTAATCCTGCTCA89240.13752489402461732No Hit
CTAAATACTACCGTATGGCCCACCATAATTACCCCCATATTCCTTACACT80380.12387103296390342No Hit
CTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTACCCAAATAAAG80180.12356281939594148No Hit
CCCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTA77800.1198950779371944No Hit
CCTAGCCTTTCTATTAGCTCTTAGTAAGATTACACATGCAAGCATCCCCG76290.11756806549908176No Hit
GTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCAT75970.11707492379034265No Hit
AGGACAGAGACGCTGGCTAGGCCGCCCTCCCCACTGTTACCAACATGAAG74690.11510235695538623No Hit
CAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTACCC74220.11437805507067567No Hit
TTTACATAAATATTATACTAGCATTTACCATCTCACTTCTAGGAATACTA71340.10993977969202375No Hit
CCGTCATCTACTCTACCATCTTTGCAGGCACACTCATCACAGCGCTAAGC68380.10537821888618705No Hit
CAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCATGATCA66120.10189540556821713No Hit
CATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCCCT65470.10089371147234084No Hit
CAAGGACAGAGACGCTGGCTAGGCCGCCCTCCCCACTGTTACCAACATGA65370.10073960468835987No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)