FastQCFastQC Report
Mon 5 Sep 2022
EGAF00004924589

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004924589
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19702851
Sequences flagged as poor quality0
Sequence length6
%GC33

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGTCA1933850998.15081583878394No Hit
NTGTCA959520.4869955114617676No Hit
ATGTCG755750.3835739304936123No Hit
ATGTTA348940.177101273313187No Hit
ATTTCA262160.13305688603136673No Hit
ATGTCC239460.12153571074561749No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)