FastQCFastQC Report
Wed 8 May 2024
EGAF00004924622

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004924622
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18454721
Total Bases147.6 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AATCCGGA1805599097.8394092221714No Hit
NATCCGGA1431060.7754438552606675No Hit
AATCCGGG332350.1800894199375867No Hit
AATCCGGC310910.16847179645793617No Hit
AATCCGAA201620.10925117751712421No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)