FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004924624

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004924624
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12322941
Sequences flagged as poor quality0
Sequence length100
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCAGAGGGAACCATGGAAACCCCAGCGCAGCTTCTCTTCCTCCTGCTAC296850.2408921701402287No Hit
CGCGGGTCTGTCTCTTGCTTCAACAGTGTTTGGACGGAACAGATCCGGGG291310.23639649009112354No Hit
CATGGACCTCCTGCACAAGAACATGAAACACCTGTGGTTCTTCCTCCTCC269910.2190305057859159No Hit
CCCAGAGGGAACCATGGAAGCCCCAGCTCAGCTTCTCTTCCTCCTGCTAC244160.19813451999810758No Hit
CACAGCATGGACATGAGAGTCCTCGCTCAGCTCCTGGGGCTCCTGCTGCT195860.15893933112233516No Hit
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT191570.1554580193153566No Hit
CAGGAGGCAGCGCTCTCAGGACGTCACCACCATGGCCTGGGCTCTGCTCC180450.14643419943339825No Hit
GTCAGGACACAGCATGGACATGAGAGTCCTCGCTCAGCTCCTGGGGCTCC177740.14423504908446774No Hit
GTCAGGACACAGCATGGACATGAGGGTCCCCGCTCAGCTCCTGGGGCTCC168940.13709389665989638No Hit
GGACACAGCATGGACATGAGAGTCCTCGCTCAGCTCCTGGGGCTCCTGCT152980.12414244294442374No Hit
CCTGGACCTCCTGTGCAAGAACATGAAACATCTGTGGTTCTTCCTTCTCC133420.10826960869162645No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)