FastQCFastQC Report
Mon 5 Sep 2022
EGAF00004924626

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004924626
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5355849
Sequences flagged as poor quality0
Sequence length101
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC245110.457649198100992No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC211280.39448460925616086No Hit
CGCAAAATTAACCCCCTAATAAAACTAATTAACCACTCATTCATCGACCT195740.36546960155150005No Hit
CTAGCATTTACCATCTCACTTCTAGGAATACTAGTATATCGCTCACACCT147430.27526914967169536No Hit
CTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCATGA145470.2716095991503868No Hit
CTACCGTATGGCCCACCATAATTACCCCCATATTCCTTACACTATTCCTC111410.2080155732545858No Hit
CATAAATATTATACTAGCATTTACCATCTCACTTCTAGGAATACTAGTAT101920.19029662710804582No Hit
CTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTACCCAAATAAAG90130.168283310451807No Hit
AGTAGGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCT84610.1579768212285298No Hit
GTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCAT83470.1558483071498095No Hit
CAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCATGATCA81730.15259952250334166No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG79750.14890262962977485No Hit
ACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTACCCAAA79520.14847319257880498No Hit
CAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTACCC69820.13036215173355337No Hit
ATATTATACTAGCATTTACCATCTCACTTCTAGGAATACTAGTATATCGC67780.12655323180321176No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG65460.12222151894125469No Hit
CCTAGCCTTTCTATTAGCTCTTAGTAAGATTACACATGCAAGCATCCCCG65280.12188543777093043No Hit
CCGTCATCTACTCTACCATCTTTGCAGGCACACTCATCACAGCGCTAAGC64750.1208958654360868No Hit
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT62820.11729232844316559No Hit
CTAAATACTACCGTATGGCCCACCATAATTACCCCCATATTCCTTACACT61950.11566793611993169No Hit
CCCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTA59380.11086944385474648No Hit
CATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCCCT57760.10784471332182816No Hit
CTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCCCTCTCAG54660.10205664872179929No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)