FastQCFastQC Report
Fri 9 Sep 2022
EGAF00004924635

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004924635
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19184647
Sequences flagged as poor quality0
Sequence length6
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGATC1882576298.1293114228268No Hit
NAGATC1068810.5571173657769153No Hit
CAGATA386120.20126510537306214No Hit
CAGCTC340540.17750652383648235No Hit
CAGATT318260.16589307064133105No Hit
CAGTTC303660.15828281854756046No Hit
TAGATC204440.10656437931852486No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)