FastQCFastQC Report
Mon 8 Aug 2022
EGAF00004924642

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004924642
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15557266
Sequences flagged as poor quality0
Sequence length151
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCTAACACGTGCGCGAGTCGGGGGCTCGCACGAAAGCCGCCGTGGCGCA581350.3736839107848384No Hit
GGAGTCTAACACGTGCGCGAGTCGGGGGCTCGCACGAAAGCCGCCGTGGC572240.3678281260987631No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA488490.31399475974763175No Hit
CGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAGAAGAAAC444320.2856028816374291No Hit
CAGATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGG353960.2275206967599577No Hit
ATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAGA343510.2208035782122643No Hit
GCTGAATTTAAGCATATTAGTCAGCGGAGGAGAAGAAACTAACCAGGATT302560.19448147251580067No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC294420.18924919069970264No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG280980.18061014062496586No Hit
GACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAGAAGAA279430.17961382160592998No Hit
CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAGAAG258800.1663531368557946No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG242920.1561456878091562No Hit
CGCTGAATTTAAGCATATTAGTCAGCGGAGGAGAAGAAACTAACCAGGAT240580.15464156748364397No Hit
GTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAGAAGAAACT209040.13436808241242387No Hit
CGCAAAATTAACCCCCTAATAAAACTAATTAACCACTCATTCATCGACCT202270.1300164180518608No Hit
TGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATT201830.12973359200774737No Hit
GATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAG197850.12717530188144885No Hit
AAGGAGTCTAACACGTGCGCGAGTCGGGGGCTCGCACGAAAGCCGCCGTG177970.11439670697923401No Hit
CGACCGTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACC177880.11433885619748353No Hit
CTAAATACTACCGTATGGCCCACCATAATTACCCCCATATTCCTTACACT175170.11259690488033053No Hit
CTTTAAATGGGTAAGAAGCCCGGCTCGCTGGCGTGGAGCCGGGCGTGGAA161440.10377144673106445No Hit
ATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGGCG161430.1037650188664255No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)