FastQCFastQC Report
Mon 12 Sep 2022
EGAF00004924662

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004924662
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4961886
Sequences flagged as poor quality0
Sequence length101
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC229190.4619009787810522No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC226640.4567618038786058No Hit
CGCAAAATTAACCCCCTAATAAAACTAATTAACCACTCATTCATCGACCT191730.3864054917827616No Hit
CTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCATGA140230.2826143123804134No Hit
CTAGCATTTACCATCTCACTTCTAGGAATACTAGTATATCGCTCACACCT136860.2758225400583568No Hit
CTACCGTATGGCCCACCATAATTACCCCCATATTCCTTACACTATTCCTC119140.24011031289312168No Hit
CATAAATATTATACTAGCATTTACCATCTCACTTCTAGGAATACTAGTAT97090.19567156520726192No Hit
CTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTACCCAAATAAAG87720.17678761664415507No Hit
CAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCATGATCA82360.16598527253548348No Hit
AGTAGGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCT81830.1649171303008574No Hit
GTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCAT79860.1609468657683792No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG75990.15314741209290178No Hit
ACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTACCCAAA73310.14774624003856598No Hit
ATATTATACTAGCATTTACCATCTCACTTCTAGGAATACTAGTATATCGC67350.13573467830578936No Hit
CAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTACCC65860.1327317878725952No Hit
CTAAATACTACCGTATGGCCCACCATAATTACCCCCATATTCCTTACACT61450.12384403833542326No Hit
CATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCCCT60370.12166744661203423No Hit
CCGTCATCTACTCTACCATCTTTGCAGGCACACTCATCACAGCGCTAAGC59540.1199946955653556No Hit
CCTAGCCTTTCTATTAGCTCTTAGTAAGATTACACATGCAAGCATCCCCG58440.11777779658782972No Hit
GTAAAACCCAGCCCATGACCCCTAACAGGGGCCCTCTCAGCCCTCCTAAT58170.11723364865698245No Hit
CTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCCCTCTCAG56470.11380753205535153No Hit
CCCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTA56120.11310215510795694No Hit
CTCCACGAGGGTTCAGCTGTCTCTTACTTTTAACCAGTGAAATTGACCTG50830.10244088638876427No Hit
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT50680.10213858198273801No Hit
TTTACATAAATATTATACTAGCATTTACCATCTCACTTCTAGGAATACTA50620.10201766022032752No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)