FastQCFastQC Report
Wed 1 May 2024
EGAF00004924672

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004924672
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15536623
Total Bases2.3 Gbp
Sequences flagged as poor quality0
Sequence length151
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT427740.27531079308547296No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC382790.24637915202035862No Hit
GTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGAGT373860.24063144223812344No Hit
GTGTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGA334660.21540073412349647No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA290380.18690033220217805No Hit
CGCAAAATTAACCCCCTAATAAAACTAATTAACCACTCATTCATCGACCT276810.17816613043902782No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC262930.16923240011680787No Hit
GTTAGTTTTACCCTACTGATGATGTGTTGTTGCCATGGTAATCCTGCTCA250180.16102598357442283No Hit
GACAAATCAAGAAACAAACTGCACTTGTTGAGCTTGTGAAACACAAGCCC248690.16006695920986178No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG243310.15660417324923184No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG238610.1535790628375291No Hit
TGTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGAG236010.1519055975033957No Hit
CCTAGAGGCAGCTGCTCCAGGAACAGAGGTGCCATGCAGCCCCGGGTACT221560.14260499208869265No Hit
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG204430.1315794300988059No Hit
CTAAATACTACCGTATGGCCCACCATAATTACCCCCATACTCCTTACACT201570.12973861823125915No Hit
AGTAGGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCT196530.1264946700450928No Hit
CTAGCATTTACCATCTCACTTCTAGGAATACTAGTATATCGCTCACACCT190280.12247191683804132No Hit
CGACCGTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACC182990.11777977749733645No Hit
TGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATT181290.11668558862501845No Hit
CTCATTCTTGGCAGGATGGCTTCTCATCGTCTGCTCCTCCTCTGCCTTGC174230.11214148660233308No Hit
CTACCGTATGGCCCACCATAATTACCCCCATACTCCTTACACTATTCCTC166290.10703098092809486No Hit
CTTTAAATGGGTAAGAAGCCCGGCTCGCTGGCGTGGAGCCGGGCGTGGAA164800.1060719565635338No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)