FastQCFastQC Report
Mon 8 Aug 2022
EGAF00004924696

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004924696
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12699844
Sequences flagged as poor quality0
Sequence length101
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT622200.4899272778468775No Hit
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG363140.285940520214264No Hit
GTTAGTTTTACCCTACTGATGATGTGTTGTTGCCATGGTAATCCTGCTCA249060.19611264516320046No Hit
CTTTAAATGGGTAAGAAGCCCGGCTCGCTGGCGTGGAGCCGGGCGTGGAA204650.16114371168653724No Hit
GACAGGTTAGTTTTACCCTACTGATGATGTGTTGTTGCCATGGTAATCCT168070.13234020827342446No Hit
CGCAAAATTAACCCCCTAATAAAACTAATTAACCACTCATTCATCGACCT157200.12378104801917252No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC152230.11986761412187424No Hit
CAAACTTTAAATGGGTAAGAAGCCCGGCTCGCTGGCGTGGAGCCGGGCGT149110.1174108910314174No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA139460.10981237249843383No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)