FastQCFastQC Report
Mon 8 Aug 2022
EGAF00004924702

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004924702
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24678595
Sequences flagged as poor quality0
Sequence length151
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC518900.21026318556627718No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA465730.18871819890881147No Hit
AGGACAGAGACGCTGGCTAGGCCGCCCTCCCCACTGTTACCAACATGAAG441420.17886755708742738No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG397150.16092893456860086No Hit
AGTAGGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCT356330.14438828466531423No Hit
GGACAGAGACGCTGGCTAGGCCGCCCTCCCCACTGTTACCAACATGAAGC352470.14282417617372464No Hit
GTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCAT296630.12019728027466718No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG266890.10814635111925942No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)