FastQCFastQC Report
Thu 2 May 2024
EGAF00004924720

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004924720
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24126871
Total Bases3.6 Gbp
Sequences flagged as poor quality0
Sequence length151
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCTAACACGTGCGCGAGTCGGGGGCTCGCACGAAAGCCGCCGTGGCGCA1112860.4612533469425024No Hit
GGAGTCTAACACGTGCGCGAGTCGGGGGCTCGCACGAAAGCCGCCGTGGC669840.27763235439854594No Hit
CGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGAAAC452650.18761239283784456No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA430220.17831570451054343No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC404130.1675020353861883No Hit
CCCCACACGCCTTTGGCACAATGAAGTGGGTAACCTTTATTTCCCTTCTT398180.16503590540190646No Hit
GACAAATCAAGAAACAAACTGCACTTGTTGAGCTCGTGAAACACAAGCCC376310.15597132342606715No Hit
ATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAA374110.15505947704532427No Hit
CTAAATACTACCGTATGGCCCACCATAATTACCCCCATACTCCTTACACT329050.13638320526519995No Hit
CCCACACGCCTTTGGCACAATGAAGTGGGTAACCTTTATTTCCCTTCTTT322120.1335108891658599No Hit
CAGATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGG317180.13146337956546458No Hit
CTCATTCTTGGCAGGATGGCTTCTCATCGTCTGCTCCTCCTCTGCCTTGC310730.12879001176737756No Hit
CTAACACGTGCGCGAGTCGGGGGCTCGCACGAAAGCCGCCGTGGCGCAAT305420.12658914618476635No Hit
GTTAGTTTTACCCTACTGATGATGTGTTGTTGCCATGGTAATCCTGCTCA304970.12640263215234168No Hit
CGCAAAATTAACCCCCTAATAAAACTAATTAACCACTCATTCATCGACCT303400.12575190541699335No Hit
CGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGAAACTAACCAGGAT297840.12344742092747958No Hit
GCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGAAACTAACCAGGATT290580.12043832787102812No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG286440.11872239877272109No Hit
CGACCGTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACC281220.11655883599659483No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC270330.11204519641191765No Hit
CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAG264880.10978630424144101No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)