FastQCFastQC Report
Mon 8 Aug 2022
EGAF00004924762

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004924762
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19054327
Sequences flagged as poor quality0
Sequence length151
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAACCAAACCATTTAC1388980.7289577847593358No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC757390.3974897670224721No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA743910.3904152584344753No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG594870.31219680443187525No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG592290.3108427812748254No Hit
CGCAAAATTAACCCCCTAATAAAACTAATTAACCACTCATTCATCGACCT585120.307079856454652No Hit
ACCCACTCCACCTTACTACCAGACAACCTTAACCAAACCATTTACCCAAA581030.304933362380104No Hit
CCCCAAACCCACTCCACCTTACTACCAGACAACCTTAACCAAACCATTTA508240.26673206563527535No Hit
GTGTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGA489350.25681830693889107No Hit
GTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGAGT462800.24288446398552938No Hit
TGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATT413070.21678540522580514No Hit
CTCCACCTTACTACCAGACAACCTTAACCAAACCATTTACCCAAATAAAG406930.2135630400380974No Hit
CAAACCCACTCCACCTTACTACCAGACAACCTTAACCAAACCATTTACCC393540.20653576481604413No Hit
CGACCGTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACC383130.20107243882190118No Hit
ATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGGCG372800.19565109804193034No Hit
CATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCCCT332920.17472146877714442No Hit
AGTAGGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCT297770.15627421530028324No Hit
TGTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGAG297560.1561640041130815No Hit
CTAAATACTACCGTATGGCCCACCATAATTACCCCCATACTCCTTACACT290490.15245356081062322No Hit
AATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGG275170.14441339229666836No Hit
CCAAACCCACTCCACCTTACTACCAGACAACCTTAACCAAACCATTTACC274910.14427694035060906No Hit
CCTTAACCAAACCATTTACCCAAATAAAGTATAGGCGATAGAAATTGAAA274400.144009284610262No Hit
CTACCGTATGGCCCACCATAATTACCCCCATACTCCTTACACTATTCCTC248460.13039557891496245No Hit
CTCCACGAGGGTTCAGCTGTCTCTTACTTTTAACCAGTGAAATTGACCTG234200.12291171448878778No Hit
GTAAAACCCAGCCCATGACCCCTAACAGGGGCCCTCTCAGCCCTCCTAAT230080.12074947595892523No Hit
CGAGGGTTCAGCTGTCTCTTACTTTTAACCAGTGAAATTGACCTGCCCGT225120.11814639268025577No Hit
CCCACTCCACCTTACTACCAGACAACCTTAACCAAACCATTTACCCAAAT224510.11782625542219359No Hit
GTCCTTCTGATCGAGGCCCAGCCCGTGGACGGTGTGAGGCCGGTAGCGGC216450.11359624509435573No Hit
CTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGGCGCATGA214840.11275129265914247No Hit
CCTAGCCTTTCTATTAGCTCTTAGTAAGATTACACATGCAAGCATCCCCG208250.10929276064171672No Hit
CTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCCCTCTCAG202570.10631181043549845No Hit
CTAGCATTTACCATCTCACTTCTAGGAATACTAGTATATCGCTCACACCT199150.1045169425296417No Hit
AGGACAGAGACGCTGGCTAGGCCGCCCTCCCCACTGTTACCAACATGAAG196570.10316291937259187No Hit
CTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCATGA196510.10313143046196278No Hit
CCGTCATCTACTCTACCATCTTTGCAGGCACACTCATCACAGCGCTAAGC194480.10206605565234605No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)