Basic Statistics
Measure | Value |
---|---|
Filename | EGAF00004924788 |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 13126935 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 49 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GCCCTCTTGAACTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTA | 29780 | 0.2268617921853045 | No Hit |
CTCCTCGGCAAAGCAGGTCTCCTTATCGTCAGCCTTGCAGCACTTCTCTA | 23419 | 0.1784041743179196 | No Hit |
GTCCAAGGCTTGTTAGGATAGTTAAGAAAGCTGCCTATTGGCTGGAGGGA | 19539 | 0.14884662718296388 | No Hit |
CTCGGCAAAGCAGGTCTCCTTATCGTCAGCCTTGCAGCACTTCTCTACAA | 16556 | 0.12612235834183685 | No Hit |
GGCTGAGATGCTTTTAAATGTGATGTTATAAGCCTAAGGCAGCTTGACTT | 16468 | 0.12545198098413682 | No Hit |
CTCTTATTCTCATGGTAGGCTGAGATGCTTTTAAATGTGATGTTATAAGC | 15909 | 0.12119356117783779 | No Hit |
CCCTCCTCGGCAAAGCAGGTCTCCTTATCGTCAGCCTTGCAGCACTTCTC | 14939 | 0.11380417439409884 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTATCGA | 4250 | 0.0 | 32.46631 | 4 |
TATCGAA | 4650 | 0.0 | 30.62458 | 5 |
CCCGTAT | 4740 | 0.0 | 30.447796 | 1 |
CGCTAGT | 135 | 2.3095708E-8 | 29.604626 | 1 |
CTTCGCG | 1990 | 0.0 | 27.779486 | 6 |
CGTATCG | 6250 | 0.0 | 25.261286 | 3 |
CCGTATC | 6495 | 0.0 | 24.444576 | 2 |
GTCGGTA | 1040 | 0.0 | 23.484438 | 1 |
TAGGTAT | 5505 | 0.0 | 22.768967 | 94 |
AGTTTAC | 19135 | 0.0 | 21.99085 | 94 |
ATCGAAG | 7205 | 0.0 | 21.851599 | 6 |
CGCTAGG | 495 | 0.0 | 21.530638 | 1 |
CCGGTAA | 960 | 0.0 | 21.278324 | 1 |
GTCCAAG | 11390 | 0.0 | 20.156618 | 1 |
GTCGTTT | 955 | 0.0 | 19.994747 | 1 |
TCAATCG | 3285 | 0.0 | 19.924782 | 8 |
GAACTCT | 23185 | 0.0 | 19.666124 | 9 |
GTCCCGT | 1040 | 0.0 | 19.641531 | 1 |
CTTGTTA | 13355 | 0.0 | 18.6768 | 9 |
CGGTAAT | 1050 | 0.0 | 18.532354 | 2 |