FastQCFastQC Report
Wed 1 May 2024
EGAF00004924790

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004924790
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17070678
Total Bases2.5 Gbp
Sequences flagged as poor quality0
Sequence length151
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG459440.2691398666180687No Hit
CGCGGGTCTGTCTCTTGCTTCAACAGTGTTTGGACGGAACAGATCCGGGG458450.2685599248020495No Hit
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT368280.2157383555591641No Hit
AGGACAGAGACGCTGGCTAGGCCGCCCTCCCCACTGTTACCAACATGAAG230850.13523188709903614No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)