FastQCFastQC Report
Mon 8 Aug 2022
EGAF00004924804

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004924804
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12837331
Sequences flagged as poor quality0
Sequence length101
%GC49

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG434000.33807650515516036No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA410400.31969262146469546No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC395390.30800015984631074No Hit
CTAAATACTACCGTATGGCCCACCATAATTACCCCCATATTCCTTACACT324620.2528718781185902No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG237840.1852721566500077No Hit
CATAAATATTATACTAGCATTTACCATCTCACTTCTAGGAATACTAGTAT236980.1846022354646772No Hit
CGCAAAATTAACCCCCTAATAAAACTAATTAACCACTCATTCATCGACCT219710.17114928328949375No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC217930.1697627022314841No Hit
AGTAGGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCT205660.16020464066868728No Hit
AAATATTATACTAGCATTTACCATCTCACTTCTAGGAATACTAGTATATC205170.1598229413886734No Hit
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT189950.14796689436456845No Hit
CATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCCCT185940.14484319209343438No Hit
AATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGG179100.13951498173568944No Hit
CTAGCATTTACCATCTCACTTCTAGGAATACTAGTATATCGCTCACACCT173730.1353318692179862No Hit
GTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCAT170030.1324496501648201No Hit
ATATTATACTAGCATTTACCATCTCACTTCTAGGAATACTAGTATATCGC169900.13234838300889804No Hit
CTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCATGA169570.13209132022848052No Hit
GTTCATCCCTAGAGGCAGCTGCTCCAGGAACAGAGGTGCCATGCAGCCCC159070.12391204994246857No Hit
AGGACAGAGACGCTGGCTAGGCCGCCCTCCCCACTGTTACCAACATGAAG154950.12070266007786197No Hit
CCGTCATCTACTCTACCATCTTTGCAGGCACACTCATCACAGCGCTAAGC154250.12015737539212785No Hit
CCTAGAGGCAGCTGCTCCAGGAACAGAGGTGCCATGCAGCCCCGGGTACT151290.11785160014959495No Hit
GTAAAACCCAGCCCATGACCCCTAACAGGGGCCCTCTCAGCCCTCCTAAT148590.11574835921890617No Hit
TTTACATAAATATTATACTAGCATTTACCATCTCACTTCTAGGAATACTA145560.11338805550779986No Hit
ATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGGCG138210.10766256630759151No Hit
TGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATT137910.10742887287084832No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)