FastQCFastQC Report
Mon 8 Aug 2022
EGAF00004924808

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004924808
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9995525
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC264910.2650286002986336No Hit
CGCAAAATTAACCCCCTAATAAAACTAATTAACCACTCATTCATCGACCT240720.24082777042726622No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC230640.23074325760777947No Hit
GTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGAGT152170.15223812656163632No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG148500.14856648350136686No Hit
GTGTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGA145700.1457652299403983No Hit
CTACCGTATGGCCCACCATAATTACCCCCATACTCCTTACACTATTCCTC139220.13928232884215686No Hit
CTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCATGA134170.13423006795541007No Hit
CGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAGAAGAAAC123430.12348525965369503No Hit
GTTAGTTTTACCCTACTGATGATGTGTTGTTGCCATGGTAATCCTGCTCA122270.12232474032129378No Hit
CGACCGTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACC118230.11828293161189633No Hit
TGTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGAG107600.10764817255721935No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA106930.1069778725979876No Hit
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT106390.10643763083980082No Hit
CTAGCATTTACCATCTCACTTCTAGGAATACTAGTATATCGCTCACACCT105880.1059274025126244No Hit
TGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATT104520.10456679364015398No Hit
CTAAATACTACCGTATGGCCCACCATAATTACCCCCATACTCCTTACACT103920.10396652501994642No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)