FastQCFastQC Report
Mon 6 May 2024
EGAF00004924871

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004924871
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences23135542
Total Bases3.4 Gbp
Sequences flagged as poor quality0
Sequence length151
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT653300.2823793797439455No Hit
AGGACAGAGACGCTGGCTAGGCCGCCCTCCCCACTGTTACCAACATGAAG396430.17135107532816823No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC396230.17126462825033448No Hit
GGACAGAGACGCTGGCTAGGCCGCCCTCCCCACTGTTACCAACATGAAGC306020.1322726737934214No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA298600.12906548720578925No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG282400.12206327390125549No Hit
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG239260.10341663921251552No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)