FastQCFastQC Report
Mon 8 Aug 2022
EGAF00004924893

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004924893
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15993685
Sequences flagged as poor quality0
Sequence length151
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA1157810.7239169709794835No Hit
CGCAAAATTAACCCCCTAATAAAACTAATTAACCACTCATTCATCGACCT913880.5714005246445706No Hit
CGGTGTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCG885010.5533496501900593No Hit
GTGTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGA843760.527558220635207No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG603180.3771363510035367No Hit
CGACCGTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACC582570.36425001492776676No Hit
AGTAGGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCT493370.3084780024115768No Hit
CTAAATACTACCGTATGGCCCACCATAATTACCCCCATACTCCTTACACT467070.29203401217417996No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG461550.28858264996465793No Hit
TTTACATAAATATTATACTAGCATTTACCATCTCACTTCTAGGAATACTA451680.28241146427480596No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC427400.2672304725271255No Hit
ATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGGCG416110.2601714364138096No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC391330.24467782127758547No Hit
GGTGTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGG385640.24112016711595857No Hit
AATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGG370530.23167268831416898No Hit
TGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATT364290.22777114842514407No Hit
CATAAATATTATACTAGCATTTACCATCTCACTTCTAGGAATACTAGTAT324730.2030363859235692No Hit
ACTAAATACTACCGTATGGCCCACCATAATTACCCCCATACTCCTTACAC303660.18986243633033914No Hit
CTAGCATTTACCATCTCACTTCTAGGAATACTAGTATATCGCTCACACCT300550.18791791885359754No Hit
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT280150.17516288460101595No Hit
AAATATTATACTAGCATTTACCATCTCACTTCTAGGAATACTAGTATATC275420.17220546734539288No Hit
TGTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGAG269730.16864781318376595No Hit
TAAATATTATACTAGCATTTACCATCTCACTTCTAGGAATACTAGTATAT268840.16809134355215824No Hit
CCGTCATCTACTCTACCATCTTTGCAGGCACACTCATCACAGCGCTAAGC264350.16528398552303614No Hit
CTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCATGA259520.1622640435897043No Hit
CCCTAATAAAACTAATTAACCACTCATTCATCGACCTCCCCACCCCATCC257820.16120112406865586No Hit
CATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCCCT254890.15936915101178997No Hit
CCAACCTCCTACTCCTCATTGTACCCATTCTAATCGCAATGGCATTCCTA254800.1593128788018521No Hit
CACTACTATAACCACCCTAACCCTGACTTCCCTAATTCCCCCCATCCTTA249150.15578023451130868No Hit
CCGACCGTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATAC243720.15238514451172447No Hit
GTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCAT238040.14883374281786843No Hit
GTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGAGT233620.14607015206314242No Hit
CTACCGTATGGCCCACCATAATTACCCCCATACTCCTTACACTATTCCTC228260.14271882933795432No Hit
ATATTATACTAGCATTTACCATCTCACTTCTAGGAATACTAGTATATCGC222370.13903612582090993No Hit
ACGGTGTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCC207240.12957614208357862No Hit
CTCCAACACATATGGCCTAGACTACGTACATAACCTAAACCTACTCCAAT206130.1288821181610117No Hit
GCAAAATTAACCCCCTAATAAAACTAATTAACCACTCATTCATCGACCTC205040.1282005991739865No Hit
TGCAGCGCAAGTAGGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGC204340.12776292643002535No Hit
CCATAATTACCCCCATACTCCTTACACTATTCCTCATCACCCAACTAAAA185030.11568941116446897No Hit
ACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTACCCAAA182820.11430761578710598No Hit
CTACTATAACCACCCTAACCCTGACTTCCCTAATTCCCCCCATCCTTACC181720.11361984433230991No Hit
CCCAACTAAAAATATTAAACACAAACTACCACCTACCTCCCTCACCAAAG176380.11028102654266356No Hit
CGTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATT176260.11020599692941307No Hit
TGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCCCTCT174880.10934315637703255No Hit
GGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCA170890.1068484217364541No Hit
AAATACTACCGTATGGCCCACCATAATTACCCCCATACTCCTTACACTAT167250.10457252346785621No Hit
CCCGTCATCTACTCTACCATCTTTGCAGGCACACTCATCACAGCGCTAAG163770.1023966646835923No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)