FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004924935

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004924935
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences564428
Sequences flagged as poor quality0
Sequence length101
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCCTCTTGAACTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTA10230.18124543785921324No Hit
CCCGTATCGAAGGCCTTTTTGGACAGGTGGTGTGTGGTGGCCTTGGTATG9870.17486729928352243No Hit
CTCCTCGGCAAAGCAGGTCTCCTTATCGTCAGCCTTGCAGCACTTCTCTA7320.1296888177057127No Hit
CTCATCAATAGATGGAGACATACAGAAATAGTCAAACCACATCTACAAAA6990.12384219067799614No Hit
CCCGTCGGCATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAGGAG6730.11923575726221945No Hit
CTCAGGGTTTGTTATAATTTTTTATTTTTATGGGCTTTGGTGAGGGGGGT6700.11870424571424523No Hit
GTTGGTTAGTAGGCCTAGTATGAGGAGCGTTATGGAGTGGAAGTGAAATC6570.11640102900635688No Hit
CTGCTGTTAGAGAAATGAATGAGCCTACAGATGATAGGATGTTTCATGTG6300.1116174250745888No Hit
CCCAAATCTTTAAACCGATGAGCAACCTCACTCTTGTGTGCATCTCGACG6040.1070109916588121No Hit
CTCCGATTATGATGGGTATTACTATGAAGAAGATTATTACAAATGCATGG5700.10098719411510415No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)