FastQCFastQC Report
Mon 8 Aug 2022
EGAF00004924953

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004924953
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16669875
Sequences flagged as poor quality0
Sequence length151
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA532400.31937851963497027No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAACCAAACCATTTAC508210.3048673130422394No Hit
GTGTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGA502570.30148396433686514No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC470100.28200571390007423No Hit
GTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGAGT422750.2536011817725088No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG405250.24310320263349305No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG389940.23391897059815986No Hit
TGTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGAG274460.16464430597110058No Hit
TGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATT267600.1605290981486064No Hit
ATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGGCG247980.14875936382246416No Hit
CGACCGTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACC232600.13953313987057492No Hit
CGCAAAATTAACCCCCTAATAAAACTAATTAACCACTCATTCATCGACCT225730.13541193320285846No Hit
ACCCACTCCACCTTACTACCAGACAACCTTAACCAAACCATTTACCCAAA220300.13215456024715241No Hit
CATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCCCT211810.1270615406534242No Hit
CTTTAAATGGGTAAGAAGCCCGGCTCGCTGGCGTGGAGCCGGGCGTGGAA194540.11670153495452126No Hit
CCCCAAACCCACTCCACCTTACTACCAGACAACCTTAACCAAACCATTTA189450.11364812273637324No Hit
AGTAGGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCT188710.11320420818992344No Hit
GTCCTTCTGATCGAGGCCCAGCCCGTGGACGGTGTGAGGCCGGTAGCGGC183600.11013879828133084No Hit
CCTAGCCTTTCTATTAGCTCTTAGTAAGATTACACATGCAAGCATCCCCG183330.10997682946032888No Hit
AATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGG181290.10875306503498076No Hit
CGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGAAAC175830.10547769554360785No Hit
GTTAGTTTTACCCTACTGATGATGTGTTGTTGCCATGGTAATCCTGCTCA173490.10407396576159089No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)