FastQCFastQC Report
Mon 8 Aug 2022
EGAF00004924958

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004924958
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13737398
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT736310.535989420995155No Hit
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG422980.3079040150107029No Hit
CGCAAAATTAACCCCCTAATAAAACTAATTAACCACTCATTCATCGACCT330540.24061325150512491No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC320410.2332392204113181No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA295020.2147568265838989No Hit
GTTAGTTTTACCCTACTGATGATGTGTTGTTGCCATGGTAATCCTGCTCA257500.18744452188107238No Hit
CCCCACACGCCTTTGGCACAATGAAGTGGGTAACCTTTATTTCCCTTCTT252120.18352820526856686No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC226840.16512588482913576No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG215060.15655075291550846No Hit
CCCACACGCCTTTGGCACAATGAAGTGGGTAACCTTTATTTCCCTTCTTT212210.15447612422672766No Hit
CTAAATACTACCGTATGGCCCACCATAATTACCCCCATACTCCTTACACT207920.15135326209519445No Hit
CTTCTGTCAACCCCACACGCCTTTGGCACAATGAAGTGGGTAACCTTTAT198250.14431408335115575No Hit
CTTTAAATGGGTAAGAAGCCCGGCTCGCTGGCGTGGAGCCGGGCGTGGAA194320.14145327958031062No Hit
CGACCGTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACC193080.14055063411571828No Hit
GTGTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGA184850.13455968881443198No Hit
CATAAATATTATACTAGCATTTACCATCTCACTTCTAGGAATACTAGTAT184710.13445777722971994No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG172750.12575161613574856No Hit
GACAGGTTAGTTTTACCCTACTGATGATGTGTTGTTGCCATGGTAATCCT170010.12375706083495579No Hit
TTTACATAAATATTATACTAGCATTTACCATCTCACTTCTAGGAATACTA169220.12318198832122357No Hit
CAAACTTTAAATGGGTAAGAAGCCCGGCTCGCTGGCGTGGAGCCGGGCGT160670.11695810225488117No Hit
CTACCGTATGGCCCACCATAATTACCCCCATACTCCTTACACTATTCCTC148640.10820098536855377No Hit
ATATTATACTAGCATTTACCATCTCACTTCTAGGAATACTAGTATATCGC148030.1077569420351656No Hit
CTAGCATTTACCATCTCACTTCTAGGAATACTAGTATATCGCTCACACCT146710.10679606137930925No Hit
CTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCATGA146380.10655584121534514No Hit
TGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATT144310.10504900564138855No Hit
CTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCTC140660.10239202503996754No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)