FastQCFastQC Report
Mon 8 Aug 2022
EGAF00004924980

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004924980
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24731059
Sequences flagged as poor quality0
Sequence length151
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC546540.22099336708549358No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA485420.19627950424605756No Hit
AGGACAGAGACGCTGGCTAGGCCGCCCTCCCCACTGTTACCAACATGAAG455640.18423796570943443No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG417430.1687877579362857No Hit
AGTAGGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCT369870.1495568790644994No Hit
GGACAGAGACGCTGGCTAGGCCGCCCTCCCCACTGTTACCAACATGAAGC366640.14825082904860645No Hit
GTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCAT309390.12510180012914124No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG280000.11321795803406558No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)