FastQCFastQC Report
Mon 8 Aug 2022
EGAF00004924982

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004924982
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10549851
Sequences flagged as poor quality0
Sequence length151
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC694520.6583220938381026No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG538550.5104811432881848No Hit
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT380030.360223096989711No Hit
GTAAAACCCAGCCCATGACCCCTAACAGGGGCCCTCTCAGCCCTCCTAAT377390.35772069197944123No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA377030.35737945493258627No Hit
CTAGCATTTACCATCTCACTTCTAGGAATACTAGTATATCGCTCACACCT351600.33327484909502514No Hit
GCAAAATTAACCCCCTAATAAAACTAATTAACCACTCATTCATCGACCTC340180.3224500516642368No Hit
CGCAAAATTAACCCCCTAATAAAACTAATTAACCACTCATTCATCGACCT323890.3070090752940492No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG299990.2843547269056217No Hit
CATAAATATTATACTAGCATTTACCATCTCACTTCTAGGAATACTAGTAT296600.2811414113810707No Hit
CATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCCCT276310.2619089122680501No Hit
CCGTCATCTACTCTACCATCTTTGCAGGCACACTCATCACAGCGCTAAGC275610.2612453957880542No Hit
CCAACCTCCTACTCCTCATCGTACCCATTCTAATCGCAATGGCATTCCTA243070.2304013582751074No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC237610.22522592973114028No Hit
CTAAATACTACCGTATGGCCCACCATAATTACCCCCATATTCCTTACACT221030.20951006796209726No Hit
AAATATTATACTAGCATTTACCATCTCACTTCTAGGAATACTAGTATATC214860.2036616441312773No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT211630.20059998951643962No Hit
AATCAACACCCTCCTAGCCTTACTACTAATAATTATTACATTTTGACTAC206010.19527290006275919No Hit
CTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCCCTCTCAG205110.19441980744562176No Hit
GCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCCCTCTC201220.19073255157821659No Hit
ATATTATACTAGCATTTACCATCTCACTTCTAGGAATACTAGTATATCGC198930.18856190480794469No Hit
CCCTAATAAAACTAATTAACCACTCATTCATCGACCTCCCCACCCCATCC198470.18812587969251887No Hit
GTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCAT198150.18782255787309224No Hit
CTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCATGA190980.181026253356564No Hit
AGTAGGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCT190420.18049544017256736No Hit
ATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGGCG183840.174258385260607No Hit
AATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGG173320.16428668044695607No Hit
CTACCGTATGGCCCACCATAATTACCCCCATATTCCTTACACTATTCCTC156590.14842863657505684No Hit
CTCCTACTCCTCATCGTACCCATTCTAATCGCAATGGCATTCCTAATGCT149460.14167024728595692No Hit
CTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGGCGCATGA128530.121831104534083No Hit
TGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATT126450.1198595127078098No Hit
CAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCATGATCA123630.11718648917411251No Hit
CGCAGCTAGGAATAATGGAATAGGACCGCGGTTCTATTTTGTTGGTTTTC123150.11673150644497254No Hit
GGGCGCGACCCGCTCCGGGGACAGTGCCAGGTGGGGAGTTTGACTGGGGC112400.10654178907360873No Hit
ATTATACTAGCATTTACCATCTCACTTCTAGGAATACTAGTATATCGCTC111110.10531902298904505No Hit
AATTAACCCCCTAATAAAACTAATTAACCACTCATTCATCGACCTCCCCA110330.10457967605419262No Hit
GTGGGATCCCGAGGCCTCTCCAGTCCGCCGAGGGCGCACCACCGGCCCGT108300.10265547826220484No Hit
CTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGGCGCAT107660.10204883462335156No Hit
TTTACATAAATATTATACTAGCATTTACCATCTCACTTCTAGGAATACTA107610.10200144058906614No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)