FastQCFastQC Report
Sun 5 May 2024
EGAF00004925023

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004925023
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24443090
Total Bases3.6 Gbp
Sequences flagged as poor quality0
Sequence length151
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCAAGACCAACCAAGATGAGTGCCCTGGGAGCTGTCATTGCCCTCCTGC441250.1805213661611523No Hit
GACCAACCAAGATGAGTGCCCTGGGAGCTGTCATTGCCCTCCTGCTCTGG412720.16884935578930488No Hit
CTCAGCTACAGCACAGATCAGCACCATGAAGCTTCTCACGGGCCTGGTTT304730.12466918053323046No Hit
CAGCTACAGCACAGATCAGCACCATGAAGCTTCTCACGGGCCTGGTTTTC294820.12061486497820038No Hit
CACAGATCAGCACCATGAAGCTTCTCACGGGCCTGGTTTTCTGCTCCTTG290290.11876158047120884No Hit
CCAAGATGAGTGCCCTGGGAGCTGTCATTGCCCTCCTGCTCTGGGGACAG290110.11868794002722242No Hit
GTTAGTTTTACCCTACTGATGATGTGTTGTTGCCATGGTAATCCTGCTCA264100.10804689587118486No Hit
CAGCATTCGGGCCGAGATGTCTCGCTCCGTGGCCTTAGCTGTGCTCGCGC262440.10736776733219901No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC246720.10093650189071839No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)