FastQCFastQC Report
Mon 8 Aug 2022
EGAF00004925032

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004925032
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12565368
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCAAAATTAACCCCCTAATAAAACTAATTAACCACTCATTCATCGACCT350190.2786945833977962No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC306140.243637910167056No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG297240.236554950081844No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA294940.2347245221946544No Hit
CTAAATACTACCGTATGGCCCACCATAATTACCCCCATATTCCTTACACT252760.20115606642002049No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC211560.16836753209297173No Hit
CATAAATATTATACTAGCATTTACCATCTCACTTCTAGGAATACTAGTAT210730.16770698637715983No Hit
CGCGGGTCTGTCTCTTGCTTCAACAGTGTTTGGACGGAACAGATCCGGGG201290.1601942736575642No Hit
CTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCATGA199680.15891297413653144No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG197430.15712233815993293No Hit
AGTAGGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCT188300.14985633528600198No Hit
GTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCAT167880.1336053190006055No Hit
CTAGCATTTACCATCTCACTTCTAGGAATACTAGTATATCGCTCACACCT167460.1332710669516404No Hit
AAATATTATACTAGCATTTACCATCTCACTTCTAGGAATACTAGTATATC165470.1316873489101155No Hit
ATATTATACTAGCATTTACCATCTCACTTCTAGGAATACTAGTATATCGC160860.12801853475361805No Hit
TTTACATAAATATTATACTAGCATTTACCATCTCACTTCTAGGAATACTA151120.12026707057047592No Hit
AGGACAGAGACGCTGGCTAGGCCGCCCTCCCCACTGTTACCAACATGAAG144860.11528512336447289No Hit
TGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATT127440.10142162171454111No Hit
CATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCCCT127410.10139774656818647No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)