FastQCFastQC Report
Mon 5 Sep 2022
EGAF00004925039

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004925039
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20401396
Sequences flagged as poor quality0
Sequence length6
%GC83

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCCGC2006436198.34798069700722No Hit
GTCTGC579740.284166828583691No Hit
NTCCGC402770.19742276459905No Hit
GTCCGT370440.1815758098122305No Hit
GTTCGC326040.15981259321666028No Hit
GGCCGC238910.11710473146053339No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)