FastQCFastQC Report
Mon 8 Aug 2022
EGAF00004925052

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004925052
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12592652
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCAAAATTAACCCCCTAATAAAACTAATTAACCACTCATTCATCGACCT341570.2712454850654175No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC304280.24163297770795222No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG298830.23730505694908427No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA290720.23086479321432848No Hit
CTAAATACTACCGTATGGCCCACCATAATTACCCCCATATTCCTTACACT251170.19945758844125924No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC210280.16698627104123898No Hit
CATAAATATTATACTAGCATTTACCATCTCACTTCTAGGAATACTAGTAT207810.16502480970648598No Hit
CGCGGGTCTGTCTCTTGCTTCAACAGTGTTTGGACGGAACAGATCCGGGG199480.15840984091357405No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG199340.1582986649674747No Hit
CTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCATGA198010.15724249347953076No Hit
AGTAGGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCT186580.1481657715944187No Hit
CTAGCATTTACCATCTCACTTCTAGGAATACTAGTATATCGCTCACACCT166390.13213261193908957No Hit
GTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCAT166330.132084965105047No Hit
AAATATTATACTAGCATTTACCATCTCACTTCTAGGAATACTAGTATATC164650.13075085375185466No Hit
ATATTATACTAGCATTTACCATCTCACTTCTAGGAATACTAGTATATCGC159910.1269867538624906No Hit
TTTACATAAATATTATACTAGCATTTACCATCTCACTTCTAGGAATACTA150340.11938708383269862No Hit
AGGACAGAGACGCTGGCTAGGCCGCCCTCCCCACTGTTACCAACATGAAG143080.11362181691354609No Hit
AATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGG126370.10035217363268674No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)