FastQCFastQC Report
Mon 8 Aug 2022
EGAF00004925053

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004925053
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13636425
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT732210.5369515837178732No Hit
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG413110.30294597007646795No Hit
CGCAAAATTAACCCCCTAATAAAACTAATTAACCACTCATTCATCGACCT322470.23647693585378865No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC318110.2332796169083906No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA292960.21483636656968377No Hit
GTTAGTTTTACCCTACTGATGATGTGTTGTTGCCATGGTAATCCTGCTCA255500.18736582352046083No Hit
CCCCACACGCCTTTGGCACAATGAAGTGGGTAACCTTTATTTCCCTTCTT247400.18142585025034055No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC221930.16274793430096232No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG213480.15655129551917016No Hit
CCCACACGCCTTTGGCACAATGAAGTGGGTAACCTTTATTTCCCTTCTTT210680.15449797142579524No Hit
CTAAATACTACCGTATGGCCCACCATAATTACCCCCATACTCCTTACACT205150.1504426563413798No Hit
CTTTAAATGGGTAAGAAGCCCGGCTCGCTGGCGTGGAGCCGGGCGTGGAA196920.14440735016692424No Hit
CTTCTGTCAACCCCACACGCCTTTGGCACAATGAAGTGGGTAACCTTTAT196500.144099351552918No Hit
CGACCGTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACC189140.1387020425074754No Hit
GTGTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGA183650.13467606062439386No Hit
CATAAATATTATACTAGCATTTACCATCTCACTTCTAGGAATACTAGTAT179280.13147140837866228No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG171220.12556076830987595No Hit
TTTACATAAATATTATACTAGCATTTACCATCTCACTTCTAGGAATACTA167840.12308211279715908No Hit
GACAGGTTAGTTTTACCCTACTGATGATGTGTTGTTGCCATGGTAATCCT164840.12088212269711453No Hit
CAAACTTTAAATGGGTAAGAAGCCCGGCTCGCTGGCGTGGAGCCGGGCGT159870.11723747243137406No Hit
ATATTATACTAGCATTTACCATCTCACTTCTAGGAATACTAGTATATCGC146640.10753551609017759No Hit
CTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCATGA146180.10719818427483745No Hit
CTAGCATTTACCATCTCACTTCTAGGAATACTAGTATATCGCTCACACCT145450.10666285335049325No Hit
CTACCGTATGGCCCACCATAATTACCCCCATACTCCTTACACTATTCCTC144630.10606152272314776No Hit
TGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATT142700.10464619575878575No Hit
CTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCTC141370.10367086681443266No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)