FastQCFastQC Report
Mon 8 Aug 2022
EGAF00004925059

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004925059
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18107668
Sequences flagged as poor quality0
Sequence length151
%GC49

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCGGGTCTGTCTCTTGCTTCAACAGTGTTTGGACGGAACAGATCCGGGG1061050.5859672267019697No Hit
AGGACAGAGACGCTGGCTAGGCCGCCCTCCCCACTGTTACCAACATGAAG453590.250496088176567No Hit
CAGAGACGCTGGCTAGGCCGCCCTCCCCACTGTTACCAACATGAAGCTGC401400.2216740443882669No Hit
GGACAGAGACGCTGGCTAGGCCGCCCTCCCCACTGTTACCAACATGAAGC363900.20096458583181445No Hit
CAAGGATTCAGAGTGCCCCTCCGGCCTCGCCATGAGGCTCTTCCTGTCGC326760.18045393807750396No Hit
CAAGGACAGAGACGCTGGCTAGGCCGCCCTCCCCACTGTTACCAACATGA324010.17893524445003078No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC277660.15333835367425558No Hit
CCTAGAGGCAGCTGCTCCAGGAACAGAGGTGCCATGCAGCCCCGGGTACT250500.13833918315710228No Hit
CGCAAAATTAACCCCCTAATAAAACTAATTAACCACTCATTCATCGACCT248100.1370137778094893No Hit
CGCTGGCTAGGCCGCCCTCCCCACTGTTACCAACATGAAGCTGCTCGCAG214370.11838631015324556No Hit
GACAAATCAAGAAACAAACTGCACTTGTTGAGCTTGTGAAACACAAGCCC200440.11069343661480871No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG199820.11035104023334202No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA188280.1039780495202364No Hit
CAGCATTCGGGCCGAGATGTCTCGCTCCGTGGCCTTAGCTGTGCTCGCGC183780.10149291449346211No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)