FastQCFastQC Report
Mon 12 Sep 2022
EGAF00004925077

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004925077
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4864420
Sequences flagged as poor quality0
Sequence length101
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCATCAATAGATGGAGACATACAGAAATAGTCAAACCACATCTACAAAA143050.2940741136661719No Hit
CCCGTATCGAAGGCCTTTTTGGACAGGTGGTGTGTGGTGGCCTTGGTATG71380.14673897401951314No Hit
GCCCTCTTGAACTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTA64670.13294493485348716No Hit
CTTGGTTATAATTTTTCATCTTTCCCTTGCGGTACTATATCTATTGCGCC60740.12486586273389223No Hit
CTCAGGGTTTGTTATAATTTTTTATTTTTATGGGCTTTGGTGAGGGGGGT60080.12350907199625033No Hit
GTAAGATTTGCCGAGTTCCTTTTACTTTTTTTAACCTTTCCTTATGAGCA57300.11779410494981929No Hit
CTCTAGAGGGGGTAGAGGGGGTGCTATAGGGTAAATACGGGCCCTATTTC56670.11649898651843386No Hit
GGGGGTCTTAGCTTTGGCTCTCCTTGCAAAGTTATTTCTAGTTAATTCAT54310.11164743175959312No Hit
CTGAGATGTTAGTATTAGTTAGTTTTGTTGTGAGTGTTAGGAAAAGGGCA49670.10210878172526221No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)