FastQCFastQC Report
Mon 8 Aug 2022
EGAF00004925109

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004925109
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12820606
Sequences flagged as poor quality0
Sequence length101
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG435280.3395159323982033No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA414870.3235962481024688No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC401460.3131365241237427No Hit
CTAAATACTACCGTATGGCCCACCATAATTACCCCCATATTCCTTACACT327500.25544814340289373No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG243570.18998321920196284No Hit
CATAAATATTATACTAGCATTTACCATCTCACTTCTAGGAATACTAGTAT241180.18811903275086997No Hit
CGCAAAATTAACCCCCTAATAAAACTAATTAACCACTCATTCATCGACCT222650.17366573779741767No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC222180.17329914046184713No Hit
AGTAGGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCT208900.16294081574615116No Hit
AAATATTATACTAGCATTTACCATCTCACTTCTAGGAATACTAGTATATC206900.16138082708414875No Hit
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT194810.1519506956223442No Hit
CATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCCCT188650.14714593054337682No Hit
AATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGG180160.1405237786731766No Hit
CTAGCATTTACCATCTCACTTCTAGGAATACTAGTATATCGCTCACACCT177750.1386439923354637No Hit
CTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCATGA174990.1364912079819004No Hit
GTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCAT171930.13410442532903669No Hit
ATATTATACTAGCATTTACCATCTCACTTCTAGGAATACTAGTATATCGC169220.13199064069202346No Hit
GTTCATCCCTAGAGGCAGCTGCTCCAGGAACAGAGGTGCCATGCAGCCCC162760.12695187731375568No Hit
AGGACAGAGACGCTGGCTAGGCCGCCCTCCCCACTGTTACCAACATGAAG158750.12382410004644086No Hit
CCGTCATCTACTCTACCATCTTTGCAGGCACACTCATCACAGCGCTAAGC155570.12134371807385703No Hit
CCTAGAGGCAGCTGCTCCAGGAACAGAGGTGCCATGCAGCCCCGGGTACT151790.1183953395026725No Hit
GTAAAACCCAGCCCATGACCCCTAACAGGGGCCCTCTCAGCCCTCCTAAT151190.11792734290407177No Hit
TTTACATAAATATTATACTAGCATTTACCATCTCACTTCTAGGAATACTA143870.11221778440114298No Hit
ATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGGCG141690.11051739675956035No Hit
TGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATT139680.10894960815424792No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)