FastQCFastQC Report
Fri 9 Sep 2022
EGAF00004925129

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004925129
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20243033
Sequences flagged as poor quality0
Sequence length6
%GC66

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GAGTGG2005912099.091475076882No Hit
GAGGGG291600.14404956016225434No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)