FastQCFastQC Report
Sun 11 Sep 2022
EGAF00004925165

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004925165
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24269190
Sequences flagged as poor quality0
Sequence length6
%GC83

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGGCC2386874998.35000261648617No Hit
NTGGCC1314180.5415013850894901No Hit
GTGGCT576890.23770467823606806No Hit
GTGGCA277720.11443315578311432No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)