FastQCFastQC Report
Mon 8 Aug 2022
EGAF00004925180

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004925180
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences23942603
Sequences flagged as poor quality0
Sequence length151
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCTAACACGTGCGCGAGTCGGGGGCTCGCACGAAAGCCGCCGTGGCGCA1083220.4524236566926328No Hit
GGAGTCTAACACGTGCGCGAGTCGGGGGCTCGCACGAAAGCCGCCGTGGC653850.2730906075667712No Hit
CGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGAAAC438750.18325075180839778No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA427800.1786773142418976No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC401610.16773865398010399No Hit
CCCCACACGCCTTTGGCACAATGAAGTGGGTAACCTTTATTTCCCTTCTT392440.16390866105911708No Hit
GACAAATCAAGAAACAAACTGCACTTGTTGAGCTCGTGAAACACAAGCCC375670.15690441010110723No Hit
ATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAA365310.1525773951980075No Hit
CTAAATACTACCGTATGGCCCACCATAATTACCCCCATACTCCTTACACT331870.13861065983510648No Hit
CCCACACGCCTTTGGCACAATGAAGTGGGTAACCTTTATTTCCCTTCTTT317820.1327424591219259No Hit
CAGATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGG310000.12947631466804174No Hit
CTCATTCTTGGCAGGATGGCTTCTCATCGTCTGCTCCTCCTCTGCCTTGC307080.12825673131697501No Hit
GTTAGTTTTACCCTACTGATGATGTGTTGTTGCCATGGTAATCCTGCTCA300860.12565885171299043No Hit
CGCAAAATTAACCCCCTAATAAAACTAATTAACCACTCATTCATCGACCT300740.12560873184924798No Hit
CTAACACGTGCGCGAGTCGGGGGCTCGCACGAAAGCCGCCGTGGCGCAAT295780.1235371108145593No Hit
CGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGAAACTAACCAGGAT295470.12340763449989127No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG293210.12246371039940811No Hit
CGACCGTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACC285080.11906808963085593No Hit
GCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGAAACTAACCAGGATT278960.11651197657999007No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC262630.10969149845570259No Hit
CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAG260210.10868074787022948No Hit
CTTCTGTCAACCCCACACGCCTTTGGCACAATGAAGTGGGTAACCTTTAT239830.10016872434463371No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)