FastQCFastQC Report
Mon 12 Sep 2022
EGAF00004925193

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004925193
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5284736
Sequences flagged as poor quality0
Sequence length101
%GC44

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCGTATCGAAGGCCTTTTTGGACAGGTGGTGTGTGGTGGCCTTGGTATG74420.1408206578341851No Hit
GCCCTCTTGAACTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTA66140.12515289316249667No Hit
CTTGGTTATAATTTTTCATCTTTCCCTTGCGGTACTATATCTATTGCGCC66040.12496366895148595No Hit
CTCATCAATAGATGGAGACATACAGAAATAGTCAAACCACATCTACAAAA59010.11166120691743163No Hit
GTAAGATTTGCCGAGTTCCTTTTACTTTTTTTAACCTTTCCTTATGAGCA57430.10867146438346212No Hit
CTCAGGGTTTGTTATAATTTTTTATTTTTATGGGCTTTGGTGAGGGGGGT56760.1074036621696902No Hit
GGGGGTCTTAGCTTTGGCTCTCCTTGCAAAGTTATTTCTAGTTAATTCAT56380.10668461016784944No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)