FastQCFastQC Report
Mon 8 Aug 2022
EGAF00004925259

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004925259
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17886176
Sequences flagged as poor quality0
Sequence length151
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGAGT404430.22611317254174396No Hit
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT363620.2032966688911034No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC334680.1871165753931975No Hit
CGTGCCTCCTGGTCTCAGTATGGCGCTGTCCTGGGTTCTTACAGTCCTGA328230.18351043845257925No Hit
GTGTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGA297200.16616184476771337No Hit
GTTAGTTTTACCCTACTGATGATGTGTTGTTGCCATGGTAATCCTGCTCA293570.1641323444429933No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA228680.1278529295473778No Hit
TGTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGAG209290.11701215508558117No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC209260.11699538235562482No Hit
CACGTGCCTCCTGGTCTCAGTATGGCGCTGTCCTGGGTTCTTACAGTCCT208020.11630210951742842No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG200090.11186851789896286No Hit
GACCAACCAAGATGAGTGCCCTGGGAGCTGTCATTGCCCTCCTGCTCTGG197660.11050992677249737No Hit
CCAAGATGAGTGCCCTGGGAGCTGTCATTGCCCTCCTGCTCTGGGGACAG190140.10630556246343545No Hit
GGCAAGACCAACCAAGATGAGTGCCCTGGGAGCTGTCATTGCCCTCCTGC182730.10216269816421353No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)