FastQCFastQC Report
Mon 8 Aug 2022
EGAF00004925298

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004925298
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12591316
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCAAAATTAACCCCCTAATAAAACTAATTAACCACTCATTCATCGACCT346170.27492757706978366No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC312270.24800425944357207No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG298830.23733023617229526No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA297380.23617864884020065No Hit
CTAAATACTACCGTATGGCCCACCATAATTACCCCCATATTCCTTACACT253390.20124187177893083No Hit
CATAAATATTATACTAGCATTTACCATCTCACTTCTAGGAATACTAGTAT210720.16735343628894708No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC210610.1672660744913399No Hit
CGCGGGTCTGTCTCTTGCTTCAACAGTGTTTGGACGGAACAGATCCGGGG201340.15990385754753514No Hit
CTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCATGA199430.15838693906181056No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG197910.15717975785851138No Hit
AGTAGGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCT188270.14952368759548249No Hit
CTAGCATTTACCATCTCACTTCTAGGAATACTAGTATATCGCTCACACCT168620.13391769375020054No Hit
GTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCAT168270.1336397243941777No Hit
AAATATTATACTAGCATTTACCATCTCACTTCTAGGAATACTAGTATATC164370.13054235156992328No Hit
ATATTATACTAGCATTTACCATCTCACTTCTAGGAATACTAGTATATCGC163320.12970844350185476No Hit
TTTACATAAATATTATACTAGCATTTACCATCTCACTTCTAGGAATACTA150340.11939975138420798No Hit
AGGACAGAGACGCTGGCTAGGCCGCCCTCCCCACTGTTACCAACATGAAG145080.1152222690622648No Hit
CATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCCCT129640.10295984947085754No Hit
AATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGG127030.10088699227308726No Hit
TGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATT126230.10025163374503505No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)