FastQCFastQC Report
Mon 8 Aug 2022
EGAF00004925330

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004925330
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18400755
Sequences flagged as poor quality0
Sequence length151
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC580680.3155740076969668No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG495680.2693802509733975No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA490400.26651080349692174No Hit
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT370450.20132326092054376No Hit
GTAAAACCCAGCCCATGACCCCTAACAGGGGCCCTCTCAGCCCTCCTAAT349590.1899867695646184No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG345990.18803032810338488No Hit
GACAAATCAAGAAACAAACTGCACTTGTTGAGCTTGTGAAACACAAGCCC288830.15696638534668822No Hit
GACAAATCAAGAAACAAACTGCACTTGTTGAGCTCGTGAAACACAAGCCC268290.1458037998984281No Hit
GCAAAATTAACCCCCTAATAAAACTAATTAACCACTCATTCATCGACCTC268140.14572228150421002No Hit
CTAGCATTTACCATCTCACTTCTAGGAATACTAGTATATCGCTCACACCT263720.1433202061545844No Hit
CATAAATATTATACTAGCATTTACCATCTCACTTCTAGGAATACTAGTAT249720.13571182269423185No Hit
CATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCCCT236840.12871210991070747No Hit
ATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGGCG235110.12777193109739246No Hit
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG232470.12633720735915457No Hit
CGCAAAATTAACCCCCTAATAAAACTAATTAACCACTCATTCATCGACCT218240.11860382902766761No Hit
CACTACTATAACCACCCTAACCCTGACTTCCCTAATTCCCCCCATCCTTA214390.11651152357607066No Hit
CCGTCATCTACTCTACCATCTTTGCAGGCACACTCATCACAGCGCTAAGC206640.11229973987480406No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC206090.11200083909600447No Hit
CCAACCTCCTACTCCTCATTGTACCCATTCTAATCGCAATGGCATTCCTA197670.10742493990056387No Hit
AAATATTATACTAGCATTTACCATCTCACTTCTAGGAATACTAGTATATC189120.10277839143013426No Hit
CTGCAAAACCCCACTCTGCATCAACTGAACGCAAATCAGCCACTTTAATT189120.10277839143013426No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)