FastQCFastQC Report
Mon 8 Aug 2022
EGAF00004925334

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004925334
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13702336
Sequences flagged as poor quality0
Sequence length101
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC426810.3114870340356564No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG415880.30351029196773455No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC406430.29661365770040965No Hit
CTAAATACTACCGTATGGCCCACCATAATTACCCCCATATTCCTTACACT370300.2702458909196213No Hit
CATAAATATTATACTAGCATTTACCATCTCACTTCTAGGAATACTAGTAT332030.24231634664337526No Hit
CGCAAAATTAACCCCCTAATAAAACTAATTAACCACTCATTCATCGACCT325090.23725151682165727No Hit
AGTAGGTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCT282790.20638086819648854No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA280650.20481909070103085No Hit
AAATATTATACTAGCATTTACCATCTCACTTCTAGGAATACTAGTATATC258740.1888291164367886No Hit
GTCTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCAT252480.1842605523612908No Hit
CTACAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCATGA250760.18300529194438087No Hit
CTAGCATTTACCATCTCACTTCTAGGAATACTAGTATATCGCTCACACCT235410.17180282252602766No Hit
ATATTATACTAGCATTTACCATCTCACTTCTAGGAATACTAGTATATCGC231890.16923391748677014No Hit
AGGACAGAGACGCTGGCTAGGCCGCCCTCCCCACTGTTACCAACATGAAG217890.15901668153517767No Hit
ACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTACCCAAA195480.14266180598694997No Hit
TTTACATAAATATTATACTAGCATTTACCATCTCACTTCTAGGAATACTA185080.1350718592800527No Hit
CATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCCCT180310.13159070103083154No Hit
CCCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTA172950.12621935413056576No Hit
CCTAGCCTTTCTATTAGCTCTTAGTAAGATTACACATGCAAGCATCCCCG170960.12476704702030368No Hit
AATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGG165910.12108154405205068No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG158340.11555693861251104No Hit
GGACAGAGACGCTGGCTAGGCCGCCCTCCCCACTGTTACCAACATGAAGC154130.11248446980135357No Hit
CAAGACGCTACTTCCCCTATCATAGAAGAGCTTATCACCTTTCATGATCA150820.11006882330136994No Hit
CCGTCATCTACTCTACCATCTTTGCAGGCACACTCATCACAGCGCTAAGC149400.10903250365485126No Hit
GTAAAACCCAGCCCATGACCCCTAACAGGGGCCCTCTCAGCCCTCCTAAT149270.10893762932101504No Hit
CAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTACCC142100.10370494490866373No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)