FastQCFastQC Report
Mon 8 Aug 2022
EGAF00004925341

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004925341
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12642528
Sequences flagged as poor quality0
Sequence length101
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT618010.4888341951862792No Hit
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG363510.2875295194125732No Hit
GTTAGTTTTACCCTACTGATGATGTGTTGTTGCCATGGTAATCCTGCTCA243670.19273835106396442No Hit
CTTTAAATGGGTAAGAAGCCCGGCTCGCTGGCGTGGAGCCGGGCGTGGAA205330.16241213782559943No Hit
GACAGGTTAGTTTTACCCTACTGATGATGTGTTGTTGCCATGGTAATCCT164340.12998982481984617No Hit
CGCAAAATTAACCCCCTAATAAAACTAATTAACCACTCATTCATCGACCT155060.12264952072876564No Hit
CAAACTTTAAATGGGTAAGAAGCCCGGCTCGCTGGCGTGGAGCCGGGCGT148840.11772961863323539No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC148570.11751605375127507No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA140780.11135431141619777No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)