FastQCFastQC Report
Wed 1 May 2024
EGAF00004925415

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004925415
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19021899
Total Bases2.8 Gbp
Sequences flagged as poor quality0
Sequence length151
%GC47

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC338790.1781052459588814No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA242140.12729538727968223No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG217500.1143418961482237No Hit
GTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGAGT213240.11210237211332055No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG212820.11188157396903432No Hit
GTGTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGA192310.10109926458972365No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)