FastQCFastQC Report
Mon 8 Aug 2022
EGAF00004925418

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004925418
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18094975
Sequences flagged as poor quality0
Sequence length151
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGAGT405720.22421694420688615No Hit
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT359720.19879552196120748No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC335080.18517848187134825No Hit
CGTGCCTCCTGGTCTCAGTATGGCGCTGTCCTGGGTTCTTACAGTCCTGA331640.18327740159906272No Hit
GTGTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGA301360.1665434740860377No Hit
GTTAGTTTTACCCTACTGATGATGTGTTGTTGCCATGGTAATCCTGCTCA293630.1622715698695356No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA230660.1274718533736576No Hit
TGTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGAG214010.11827040379994999No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC210620.11639695550836628No Hit
CACGTGCCTCCTGGTCTCAGTATGGCGCTGTCCTGGGTTCTTACAGTCCT208360.11514798998064378No Hit
CTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGG200640.11088161216028206No Hit
GACCAACCAAGATGAGTGCCCTGGGAGCTGTCATTGCCCTCCTGCTCTGG193420.10689155414693857No Hit
CCAAGATGAGTGCCCTGGGAGCTGTCATTGCCCTCCTGCTCTGGGGACAG192500.106383125702025No Hit
GGCAAGACCAACCAAGATGAGTGCCCTGGGAGCTGTCATTGCCCTCCTGC183290.1012933148567489No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)